rs30724717 SNP Detail

Summary

• ID
  rs30724717
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71956961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCCAGA AAACCCTGCC
  CTGAGGACGC AGCCTGCAGG ATAGATAGGG CATTCATTCT TTGGGTGAAA AGGCAGGGTG
  ACTACTTACT CACTTTCTTC TTACACTAGA GTGGAGAGGG GATTCTTGTA GGAAATATCA
  AGGTAGTCTG GAAGCTGTGG CGTCCAGAGC CTAGGTGGGT GTGTGACTTC CTGCAGTCAA
  Y
  CTTACCTGGA ACTGAAGAGC ATAGAGCTAA AGGAGCAAAC CCTGAATGTA AACATTAATG
  TGACCACACT TATGCCAGAC CTCTGACCTG TACTGGAGCC TGGAGTGGTG GCATCCTTCC
  TCCACCCACC CACCCAGCTG TTTCACATTT AGCTTGGGTC TACTGTGCCT GTTTTGAAAT
  AGCTTCAAAG AAAGAACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47975814	NES11901592	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30724717					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47975814	NES11901592	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71956961 () rs orientation: forward

Symbol	Name	Function Class
Gm68334	predicted gene, 68334	within coordinates
Polr1a	polymerase (RNA) I polypeptide A	mRNA-UTR
Rr632036	regulatory region 632036	37 bp proximal
Rr632037	regulatory region 632037	1468 bp proximal