GGGTCCCAGA AAACCCTGCC CTGAGGACGC AGCCTGCAGG ATAGATAGGG CATTCATTCT TTGGGTGAAA AGGCAGGGTG ACTACTTACT CACTTTCTTC TTACACTAGA GTGGAGAGGG GATTCTTGTA GGAAATATCA AGGTAGTCTG GAAGCTGTGG CGTCCAGAGC CTAGGTGGGT GTGTGACTTC CTGCAGTCAA Y CTTACCTGGA ACTGAAGAGC ATAGAGCTAA AGGAGCAAAC CCTGAATGTA AACATTAATG TGACCACACT TATGCCAGAC CTCTGACCTG TACTGGAGCC TGGAGTGGTG GCATCCTTCC TCCACCCACC CACCCAGCTG TTTCACATTT AGCTTGGGTC TACTGTGCCT GTTTTGAAAT AGCTTCAAAG AAAGAACATT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47975814 | NES11901592 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs30724717 | SNP | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47975814 | NES11901592 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr6:71956961 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm68334 | predicted gene, 68334 | within coordinates | ||||||
Polr1a | polymerase (RNA) I polypeptide A | mRNA-UTR | ||||||
Rr632036 | regulatory region 632036 | 37 bp proximal | ||||||
Rr632037 | regulatory region 632037 | 1468 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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