rs30724585 SNP Detail

Summary

• ID
  rs30724585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57482005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG CAGTTTCCAC TTCATGAAAC
  R
  TTCTCTGTTC TAGTCAAGTA CAACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46978335	NES10794556	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G		G	G	G	G		A
ss320781041	CHEV_3_57378506	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30724585					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978335	NES10794556	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57482005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	82 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	59 bp proximal
Gm65379	predicted gene, 65379	1479 bp downstream
Gm65672	predicted gene, 65672	1971 bp upstream
Rr577124	regulatory region 577124	1732 bp distal
Rr577125	regulatory region 577125	1234 bp proximal
Rr577126	regulatory region 577126	1896 bp proximal
Rr577127	regulatory region 577127	1982 bp proximal
Tssr33328	transcription start site region 33328	1176 bp downstream
Tssr33329	transcription start site region 33329	1260 bp downstream
Tssr33330	transcription start site region 33330	1271 bp downstream
Tssr33331	transcription start site region 33331	1323 bp downstream
Tssr33332	transcription start site region 33332	1854 bp downstream
Tssr33333	transcription start site region 33333	1863 bp downstream
Tssr33334	transcription start site region 33334	1871 bp downstream
Tssr33335	transcription start site region 33335	1901 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron