rs30723917 SNP Detail

Summary

• ID
  rs30723917
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132588995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGCCCC TCAGTCTTCT
  CTTCTCCAGG CAGAACACTC CCAGTTCCTT TAGTTTGTCA CCATAGATCT TTTTTTCCAA
  CCCTTTAATC ATCTTTGTGT CTCCTGGCAA AAACAGCAGA AAATATTTTG ATTACTTAAT
  CAGAAGGGTG AGAAATGCTA AGGAGAAAAG TTGACTCTCT AAAGCTATGT GTTTTTTTAA
  R
  ACAGCGGTCT GACAGGGAGG AGACGAAGTT GGGGCTCTGT CGATATTAAA ATTCCAATCT
  TGTCCTCCTC GACAGTGCTA GTGTTGCTCC ATCATCGGCA GCGTCACCTC TGTGCACAGG
  CCTGCTTCCT AGCCCAGCCT CAGGTAACAC ATTAGCTGCA CTCGTGGAAA CCTTGCTGAT
  TTAAAGCACC TGTCTTATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46978438	NES10885401	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30723917					SNP	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978438	NES10885401	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132588995 () rs orientation: forward

Symbol	Name	Function Class
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	mRNA-UTR
Rr585475	regulatory region 585475	1939 bp distal
Rr585476	regulatory region 585476	57 bp proximal
Rr585477	regulatory region 585477	1314 bp proximal
Tssr35736	transcription start site region 35736	148 bp downstream