rs30723773 SNP Detail

Summary

• ID
  rs30723773
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57481633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACCCCT ATGACCTCAC
  TGGTTCTGAT AACAATTCAA GTGCCAGCCC CGGCTTTCCC TCAAGAACTC CCTCTAGCAA
  TTGAGAATAC ATTTCTCTGT TCGATCTAAT TCAAAAAGCT GGATCTAATG TAAAATTCAC
  AACCTCAAAA AGCTAGGCAG ATAGGGCATG AAGGATGACA ACGCACACTA CTGCCCTGCC
  R
  TGACGGTATT TTAGGTTACC AAGTGTAACA TAAGACTCCT GACCCAATTT CCACACAATT
  TGTTGGTCCA GCCCATAACT ACTTTACAGT GCGGTTGGTA ATTACATTAC TGTGCTGTGT
  GGTCATTACG TCATCAGCTG GGAGAGGTAA AGCCCACCAG GCACTGTGTT CTTTTCCGGT
  TTGCTTTTCC TGAGTGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46978333	NES10794553	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30723773					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978333	NES10794553	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57481633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	454 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	431 bp proximal
Gm65379	predicted gene, 65379	1851 bp downstream
Rr577124	regulatory region 577124	1360 bp distal
Rr577125	regulatory region 577125	1606 bp proximal
Tssr33328	transcription start site region 33328	1548 bp downstream
Tssr33329	transcription start site region 33329	1632 bp downstream
Tssr33330	transcription start site region 33330	1643 bp downstream
Tssr33331	transcription start site region 33331	1695 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron