rs30723771 SNP Detail

Summary

• ID
  rs30723771
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57481475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GTTCTGATAA CAATTCAAGT
  K
  CCAGCCCCGG CTTTCCCTCA AGAAC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46978331	NES10794552	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G		G	G		T
ss320781039	CHEV_3_57377976	CHEVERUD	SCREENING_POP	f	SNP										G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30723771					SNP	G	G	G	G	G	G	G	T	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978331	NES10794552	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57481475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	612 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	589 bp proximal
Rr577124	regulatory region 577124	1202 bp distal
Rr577125	regulatory region 577125	1764 bp proximal
Tssr33328	transcription start site region 33328	1706 bp downstream
Tssr33329	transcription start site region 33329	1790 bp downstream
Tssr33330	transcription start site region 33330	1801 bp downstream
Tssr33331	transcription start site region 33331	1853 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron