rs30723765 SNP Detail

Summary

• ID
  rs30723765
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57481340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATATGCC CACAGCATCC
  ACTGCCATCC GCTCATTCTT AGAGGGTAAT CAAAGGACCA AAGATAGTTA ATGCCAAGGA
  GGAGCTTGGC ATTACATTTT TTAAAATAGT ACGTGCTATC TTACATTTGA GCCTTTCAAA
  GCAAGGCTAC TTCAGCAAAG GAACGGGGCT GTAAGATGAA GTTTAAGACA AGTTCTTAGA
  K
  GTCTTCCCTT TGGGCAGGCA GCGCAGCCGA GCCGAGCTGA AGTGATTCTA CACCAATGGC
  TCAGCCACAA CTTCTTCGGA GGCCTTTTCT AACCTGACCC CTATGACCTC ACTGGTTCTG
  ATAACAATTC AAGTGCCAGC CCCGGCTTTC CCTCAAGAAC TCCCTCTAGC AATTGAGAAT
  ACATTTCTCT GTTCGATCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46978325	NES10794549	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30723765					SNP	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978325	NES10794549	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57481340 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13196	CpG island 13196	747 bp proximal
D3Mit172	DNA segment, Chr 3, Massachusetts Institute of Technology 172	724 bp proximal
Rr577124	regulatory region 577124	1067 bp distal
Rr577125	regulatory region 577125	1899 bp proximal
Tssr33328	transcription start site region 33328	1841 bp downstream
Tssr33329	transcription start site region 33329	1925 bp downstream
Tssr33330	transcription start site region 33330	1936 bp downstream
Tssr33331	transcription start site region 33331	1988 bp downstream
Wwtr1	WW domain containing transcription regulator 1	Intron