rs30723265 SNP Detail

Summary

• ID
  rs30723265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57379831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATGTGTT GAGTAAATAT
  ATGAATGGAT GAACTTAAAA CAGCCATCTT ACTACAGATG ACTTAGGGAT ATATGGTGAA
  CGTAGGACAA CAGGACCAGT CAAATGCCTT AGTCAACCCT GAAACCTAAC TCTACAGTGT
  GCTTTCCTAA TAACTATACC TCATGTTCCA AGGGCTATGT AGCAGCCACT GATTGCCCTA
  Y
  ACGCTTTGCT AGGTATGTTT TTAAGTTCTG AAAAATCTCT TAAAAACTCA AGACAGAAAA
  CAGCCCTTTA AATCTTCCCT GAGAGGAGCA CGGCTCTCCT TGGCAGCATG GATCTGAAAT
  GGCTGTGTGA GGCTGGGCAG CTGACCCTAC CCCCACCCCC AGAGTGGCTG TCAAGCTTGA
  CAGAAATCTG TAAAACCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977315	NES10795599	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30723265					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977315	NES10795599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57379831 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	713 bp distal
Rr375020	regulatory region 375020	540 bp downstream
Rr577104	regulatory region 577104	574 bp distal
Rr577107	regulatory region 577107	within coordinates
Wwtr1	WW domain containing transcription regulator 1	Intron