rs30723192 SNP Detail

Summary

• ID
  rs30723192
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132588387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGATTTG TTCTGTTAAT
  ACTGCTGGGT TGGCTGTTGA GTGAAGACCC TTTCAGTGAG CTTGACATTT CCTTTTGTGC
  CCTTTACAGG AGGAGGCCAA GAGCAGAAAG TCTACCTTGG AGCTCAGTCC AAACTGCTCA
  GTTCTGAAGA TGGTCATTAT CATGGACTAC TTTGGAGACC AAAGTGTCTT CTAGTGTCCA
  Y
  GATCAGGGAC TTTACCTTGA AGTACGTACA CCTTAAATAC CTAACATTTT ATGTAGTTTT
  TTTTTTTTTT TTAATGGAGG GAAGGGACAA AGAAGATAGA GAGGAAGAGA AGAGAACAGA
  AAGGGAGAGA GAGAGATGAA GGTAGAAGTA AGGGGGGGAG GAAAGAAGGA AGGGAGGGAG
  GAAAGAAGGA AGGAAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46978432	NES10885398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30723192					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46978432	NES10885398	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132588387 () rs orientation: forward

Symbol	Name	Function Class
Gm65623	predicted gene, 65623	within coordinates
Npnt	nephronectin	mRNA-UTR
Rr585474	regulatory region 585474	1570 bp distal
Rr585475	regulatory region 585475	1331 bp distal
Rr585476	regulatory region 585476	665 bp proximal
Rr585477	regulatory region 585477	1922 bp proximal
Tssr35736	transcription start site region 35736	756 bp downstream