rs30722175 SNP Detail

Summary

• ID
  rs30722175
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88739872 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAATC TTTCGGGCAG AGGCGGAGTC
  W
  TCTGCCAAGG GCCTTTCAGA AGAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46436919	mCV22843936	ABI	CRAMUS_MOUSE	f	SNP		T	A	T
ss46745783	NES10754917	PERLEGEN	MM_PANEL2	r	SNP	A		T		A	T	A	T	A	A
ss135472286	ENSMUSSNP1004046	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30722175					SNP	T	T	A	T	T	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46745783	NES10754917	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88739872 () rs orientation: reverse

Symbol	Name	Function Class
1500004A13Rik	RIKEN cDNA 1500004A13 gene	18 bp upstream
Gm64348	predicted gene, 64348	within coordinates
Rr375322	regulatory region 375322	473 bp downstream
Rr397779	regulatory region 397779	within coordinates
Rr579901	regulatory region 579901	1118 bp distal
Rr579902	regulatory region 579902	90 bp distal
Rr579903	regulatory region 579903	971 bp distal
Rr579904	regulatory region 579904	within coordinates
Tssr34067	transcription start site region 34067	within coordinates