rs30719477 SNP Detail

Summary

• ID
  rs30719477
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57355913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTAAGCA AGCAAACATA
  CCCACTTTCT GTAAATGTAG TGGTTCTCAA ATGTGAGGGC ATTCTGGCTG ACTGAGTAAC
  AGAGAAACCC CATCCCTCGG CCTCCTGCAG AGCCAAGAAG TCTAATTTTA TGCTAAAGAC
  TTAAGATGTC TATAGCAGGA GAGCCATCAA CACCGCTGTG AACCTGCTCT TATAGAAACT
  K
  TATTCCTTCC GGTTTCCTTT GTCTTTAATA ACCTCACTAG CACTAAAATC CACAAATCTC
  TCCATCAAAG AATGTACAGT TAAATGCAAA GAAGGACGCC AAAATGTCTG TCCCACATGT
  CTTTTCCTTT TCTGTGGTGT TCTGTGCTCT GAGCCAGAGT TGCCTTCATA CATAGACAAG
  ACTATTTGCT GCCCTCTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977267	NES10795711	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30719477					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977267	NES10795711	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57355913 () rs orientation: forward

Symbol	Name	Function Class
Rr577098	regulatory region 577098	595 bp distal
Rr577099	regulatory region 577099	395 bp distal
Rr577100	regulatory region 577100	26 bp proximal
Rr577101	regulatory region 577101	186 bp proximal