rs30719475 SNP Detail

Summary

• ID
  rs30719475
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57355799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCATGTGG AAAGTTGCCA
  TGTAAACTTC AATTTGGTGT CTGTGTTTTT AATTTTTATG TTTATGTGTG TTCAGTAATG
  CAGAACAGCC ATACTTGTAT GTGTCATAAA CTAAACAGTA AGCAAGCAAA CATACCCACT
  TTCTGTAAAT GTAGTGGTTC TCAAATGTGA GGGCATTCTG GCTGACTGAG TAACAGAGAA
  W
  CCCCATCCCT CGGCCTCCTG CAGAGCCAAG AAGTCTAATT TTATGCTAAA GACTTAAGAT
  GTCTATAGCA GGAGAGCCAT CAACACCGCT GTGAACCTGC TCTTATAGAA ACTTTATTCC
  TTCCGGTTTC CTTTGTCTTT AATAACCTCA CTAGCACTAA AATCCACAAA TCTCTCCATC
  AAAGAATGTA CAGTTAAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977265	NES10795710	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30719475					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977265	NES10795710	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57355799 () rs orientation: forward

Symbol	Name	Function Class
Rr577098	regulatory region 577098	481 bp distal
Rr577099	regulatory region 577099	281 bp distal
Rr577100	regulatory region 577100	140 bp proximal
Rr577101	regulatory region 577101	300 bp proximal