rs30718799 SNP Detail

Summary

• ID
  rs30718799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57355726 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAATCA TGACACCAGA
  ATGGTCACTT AGATAGTGTT AATTAGCATC TGTTCTTCCC ACTGTCCTCC AGATGCCATG
  TGGAAAGTTG CCATGTAAAC TTCAATTTGG TGTCTGTGTT TTTAATTTTT ATGTTTATGT
  GTGTTCAGTA ATGCAGAACA GCCATACTTG TATGTGTCAT AAACTAAACA GTAAGCAAGC
  R
  AACATACCCA CTTTCTGTAA ATGTAGTGGT TCTCAAATGT GAGGGCATTC TGGCTGACTG
  AGTAACAGAG AAACCCCATC CCTCGGCCTC CTGCAGAGCC AAGAAGTCTA ATTTTATGCT
  AAAGACTTAA GATGTCTATA GCAGGAGAGC CATCAACACC GCTGTGAACC TGCTCTTATA
  GAAACTTTAT TCCTTCCGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss45497532	mCV24427971	ABI	CRAMUS_MOUSE	f	SNP		A	G					A
ss46977259	NES10795707	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	G	A	A	G
ss135201377	ENSMUSSNP5741269	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30718799					SNP	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977259	NES10795707	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57355726 () rs orientation: forward

Symbol	Name	Function Class
Rr577098	regulatory region 577098	408 bp distal
Rr577099	regulatory region 577099	208 bp distal
Rr577100	regulatory region 577100	213 bp proximal
Rr577101	regulatory region 577101	373 bp proximal