rs30718797 SNP Detail

Summary

• ID
  rs30718797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57355698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCTCC TACTGACTGC
  TGGAGTAAAA CAAAATCATG ACACCAGAAT GGTCACTTAG ATAGTGTTAA TTAGCATCTG
  TTCTTCCCAC TGTCCTCCAG ATGCCATGTG GAAAGTTGCC ATGTAAACTT CAATTTGGTG
  TCTGTGTTTT TAATTTTTAT GTTTATGTGT GTTCAGTAAT GCAGAACAGC CATACTTGTA
  Y
  GTGTCATAAA CTAAACAGTA AGCAAGCAAA CATACCCACT TTCTGTAAAT GTAGTGGTTC
  TCAAATGTGA GGGCATTCTG GCTGACTGAG TAACAGAGAA ACCCCATCCC TCGGCCTCCT
  GCAGAGCCAA GAAGTCTAAT TTTATGCTAA AGACTTAAGA TGTCTATAGC AGGAGAGCCA
  TCAACACCGC TGTGAACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46977257	NES10795706	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30718797					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977257	NES10795706	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57355698 () rs orientation: forward

Symbol	Name	Function Class
Rr577098	regulatory region 577098	380 bp distal
Rr577099	regulatory region 577099	180 bp distal
Rr577100	regulatory region 577100	241 bp proximal
Rr577101	regulatory region 577101	401 bp proximal