rs30717959 SNP Detail

Summary

• ID
  rs30717959
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57355010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCT CGTATAGTCT CCTTCCTCCC
  S
  TACAGAGTGG GGGCTCCTCT GCATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
ss45479485	mCV24427972	ABI	CRAMUS_MOUSE	f	SNP		C	C				C	G
ss46977249	NES10795712	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C		G	C		C
ss320780639	CHEV_3_57251511	CHEVERUD	SCREENING_POP	f	SNP										C		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	SM/J
rs30717959					SNP	C	C	C	C	C	C	C	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977249	NES10795712	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57355010 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	1384 bp distal
Rr577098	regulatory region 577098	287 bp proximal
Rr577099	regulatory region 577099	487 bp proximal
Rr577100	regulatory region 577100	929 bp proximal
Rr577101	regulatory region 577101	1089 bp proximal