rs30717821 SNP Detail

Summary

• ID
  rs30717821
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57342514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGTGTG TTCACTGGCA
  TCAAGTACCT CAACTTTATT CTCACAACTA ACCAAGTCGA GGTGGCTGTC ATCTTCACAT
  CACATGCAGC GACTCCAAAA TGTTTCTTTT ACTGTGGAAA ATCCCCATGT CTTTCAGAGA
  ACTCTTGAGA CTCCATCATT GTGGGGTTGG GTTGAGGAAT GTAGCATTCA GACACCAGCG
  R
  GCTGAGCTTT CTCTTGAGGT ATTTTGTCAA TAGCTCAGTC TCTCCCCTAG GAAGAATATG
  GAGAGCAGTG GATTACTTCT TTCTGGTGAA CACTTCTGCT ATTGCTTCCA TCAACCGCAT
  CCCTGCAGTG TTGCCACAGA TTTCTGTGGT GTTCTGCTGT GTAAAAAACA TTGCCTTCCT
  AAAGGCTGTG TCAAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977157	NES10795791	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717821					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977157	NES10795791	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57342514 () rs orientation: forward

Symbol	Name	Function Class
Rr577095	regulatory region 577095	146 bp proximal
Rr577096	regulatory region 577096	1458 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Intron
Tssr29185	transcription start site region 29185	1290 bp downstream