rs30717818 SNP Detail

Summary

• ID
  rs30717818
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57342178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGCTCC AGGACATCTA
  TAGTTATTTA TACCCAAATA ACTTTAGCCT TGCACAGGCC AGCACAGCAT TTGCATATTG
  CTTATAATCC TTGATGCAAT GTAAATGCAA TGCAAACAAT TGATACACTG TTTTGCTTAG
  AGAACAATGA CATGTTCATT ACAGATGCCA TTTTATCAGC TGTTTATGAC CAAACTTACA
  W
  GTGTGGAACC TGAGCATGCA GAGGGAAAGC TGTATTAACT GAGACTCCTC TTTGTTCCTT
  TGCAACGAAA TCCTTAGAAA CGTCAAGAAT CATCTTCAGC TAGGGAGGTG GGAGGCCCTG
  GCTCAGATCT GGTGGCCTTG GTGTGTTCAC TGGCATCAAG TACCTCAACT TTATTCTCAC
  AACTAACCAA GTCGAGGTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977149	NES10795787	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717818					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977149	NES10795787	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57342178 () rs orientation: forward

Symbol	Name	Function Class
Rr577095	regulatory region 577095	482 bp proximal
Rr577096	regulatory region 577096	1794 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Intron
Tssr29185	transcription start site region 29185	954 bp downstream