rs30717815 SNP Detail

Summary

• ID
  rs30717815
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57341145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTGAA AAGGCGGAGC
  ACAGGACACA AAGCTTCACC CTTACAGAGC TAGACGTCTC CTTTGTAATA ACAAATGACT
  CCTACCCTAA GGCCATCATG TTCAGCGTCA GGCCGGGCAG GTATACTGAA TGGCGTAACT
  GGACATAATT AATCTCTGCC TAAGAGCCTT GTTGTCTCTC TTCTTTCAGA TGTTCACCTC
  Y
  ACGTTGTTTG CTGTGATTGG ATTCTTAGGT GCTGGCTACT CATTTATCGT CTCAGCTGTT
  TCTATCAACA AGGGTCCTAA ATGCTTCATG GCCAATGGTA CATGGGGATA CCCCTTCCAC
  GATGGGTAAG GCTCCACTGG ACAATGATCA TAATGGGGTG ACAGCCTCTC CACCATGTAC
  TCTCAGCATG TCACCCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977145	NES10795800	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717815					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977145	NES10795800	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57341145 () rs orientation: forward

Symbol	Name	Function Class
Rr577094	regulatory region 577094	1486 bp distal
Rr577095	regulatory region 577095	1515 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Coding-Synonymous
Tssr29185	transcription start site region 29185	47 bp upstream