rs30717163 SNP Detail

Summary

• ID
  rs30717163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57354355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACAGGAC TTGAAGGTCA
  GAGGCATTAA GGGGAATCCT GGGAAAGTGG AGAGTTGAAG AGCCAGTGTG TATATTATAG
  AGGTGAGGTC ATGGATCAGC AATAGTCCAT ACGAGCTAAC AGGTAGCTGC TGCTTCCCCC
  TGCCCACCAG GAGCTCAAGA GTCCTATCTG GTTAGTGTGC TGCCAGGCAA CCCTTGAAGC
  Y
  GGGATGAGGA GCTGTCACTC AGCTGAGCCC AGGTTACACA TTACAAAGTC TCCAGGCCAA
  CCTTGGAGGA GGGAAGTGGG TTTTAGTTTT CTTGTATTGT TTCTTTTTAA GAATTACTTT
  TAGTGATTGT GCATGTAGGG AGGTTTGCGT GTAGAGGTCA GAGGACAACT CTGAGAAGTC
  AGCTCTTTTC ATCTGTCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46977243	NES10795734	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717163					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46977243	NES10795734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57354355 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	729 bp distal
Rr577098	regulatory region 577098	942 bp proximal
Rr577099	regulatory region 577099	1142 bp proximal
Rr577100	regulatory region 577100	1584 bp proximal
Rr577101	regulatory region 577101	1744 bp proximal