rs30717084 SNP Detail

Summary

• ID
  rs30717084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71957511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATAAGTA TGCTCTCTCC
  TACTTACCTC CCTGGGGTGG AGTCGTAAAC CACCACCACC CCTTCAGCAC TAAAGATTGA
  GCCCGGGGCT GCATGTGCGA GATGAGTGTT CTGCTCTACC CTCCCCAGCA CCTGCGGAAC
  ATTTTAGAAA GCTGATTATA GAACCGCACT CCAGGATTGA GATAAGAGTG GCCTTGGGTA
  Y
  ACCCCGGATA TGAAATGAGC TTCAGAAAAG AGTATACAGC AAGAGTCAAA CCACAAGCTT
  AGTTCACCCG CAGTACTGTG ACTTAAAGCT AACTTCACTT GAGTGTGAGG TGATGTGGGA
  AGTAAGTCAC TGGCCCTCAG TCCTCCAGTG AGCTCTAAAT AGCTAATGTC TGCAGGGACT
  CTAGAGATTG CTCAAAGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47975824	NES11901597	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30717084					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47975824	NES11901597	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71957511 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68334	predicted gene, 68334			within coordinates
Polr1a	polymerase (RNA) I polypeptide A			Intron
				mRNA-UTR
Rr632036	regulatory region 632036			within coordinates
Rr632037	regulatory region 632037			918 bp proximal