rs30716464 SNP Detail

Summary

• ID
  rs30716464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57044555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGCAAACT GCTTCCTGGG GCGAAGGGAC GCCCGACCCC
  CACCCCCACC CCACCCCCTA GCGTGCTTCG ATCTGGCTGG CTCTTCTCTG GCGGTGATGG
  Y
  GAAAGTGTGT GGTCTGTGTC AGGTGTGGGT CGATGCTCAG GAGGCCGCGC TGGGCTGTGC
  AAAACGCTCA CTGACGCATT TGTACTTTCT ACCAAAAAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46976012	NES10788066	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30716464					SNP	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976012	NES10788066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57044555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	72 bp distal
Gm8177	predicted gene 8177	313 bp upstream
Gm64707	predicted gene, 64707	within coordinates
Rr375016	regulatory region 375016	within coordinates
Rr577070	regulatory region 577070	47 bp distal
Rr577071	regulatory region 577071	within coordinates