rs30715403 SNP Detail

Summary

• ID
  rs30715403
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57044282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGTTCTG TATTGCCCTC
  AGGGTGAGAT CCAGATGTGG CTGCAGTTTC ATGCCAAGAG GGTTCAGTTA CAGGAGTGCC
  ATCCGGATTT CCAGAAGGAA TTTCTTGCCA TACTTTGGCA TTAGGATTTA AACCAGTGCC
  TTTAGATGTC ACCTGCTCAA CGAAGAGCAA CATGTCTGCT TCCGCTCGTC CCAATCGTTC
  M
  CGCTGCTGCC TCTACTCCAA CTGGCTCCCA GGCCCGGGCC TGTCGGTAGG ATAAGGACAA
  TTGCCTTGCC CCTCCACCCA GCAGTGGACC CGGCTCCTCC CCCGCTGTCA GCCGCTGTGC
  CCTGACCCGC CCAGTCCCGC CTCCTGGGAA GCAACAACTG CTTCCCGTTT TGGAGGCAAA
  CTGCTTCCTG GGGCGAAGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46976010	NES10788065	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30715403					SNP	C	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976010	NES10788065	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57044282 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	within coordinates
Gm8177	predicted gene 8177	40 bp upstream
Gm64707	predicted gene, 64707	216 bp upstream
Rr375016	regulatory region 375016	within coordinates
Rr577070	regulatory region 577070	within coordinates
Rr577071	regulatory region 577071	227 bp proximal