rs30715399 SNP Detail

Summary

• ID
  rs30715399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57043920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATCCATT TGAGATATCA AGTAAAGGTC CTTTGATAAA
  TTTTCTCGTG AGAAACAGAA TTCCAACTGT TTTTTCAGAC ATTCTTTTAA ATCTTCTGTA
  R
  AAATTGTTGA ACTGCTTTCT CCAGAAACTT CATATAGTTG GTAACTCAGG TCTTCAGGTC
  CTAAGATCAT TCCATCAGCT GACTTTTCAA TGCCTGCAGT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46976006	NES10788061	PERLEGEN	MM_PANEL2	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30715399					SNP	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46976006	NES10788061	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57043920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	321 bp proximal
Gm8177	predicted gene 8177	within coordinates
Gm64707	predicted gene, 64707	578 bp upstream
Rr375016	regulatory region 375016	within coordinates
Rr577070	regulatory region 577070	287 bp proximal
Rr577071	regulatory region 577071	589 bp proximal