rs30714937 SNP Detail

Summary

• ID
  rs30714937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:41516623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACAGAGAG ATGATGGATG AACAAGATGG CAGTGGTGAT
  GGAGACACCT CTCTTGAAAA CCTCCCTCAT TTCTCTCTCT ATCTCTGTCT CTGTCTCTCT
  S
  TGTGTCTCGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGAACTG TAGACCACAC
  AGTACTAGTA AGGGTTCTAC CCATCATTTG TCGCCTCAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45459435	mCV23248007	ABI	CRAMUS_MOUSE	f	SNP	G	C
ss135042144	ENSMUSSNP4117015	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs30714937					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:41516623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13118	CpG island 13118	968 bp proximal
Gm31266	predicted gene, 31266	within coordinates
Jade1	jade family PHD finger 1	Intron
Rr575965	regulatory region 575965	766 bp proximal
Rr575966	regulatory region 575966	1160 bp proximal
Rr575967	regulatory region 575967	1500 bp proximal
Rr575968	regulatory region 575968	1754 bp proximal
Tssr29000	transcription start site region 29000	1497 bp downstream
Tssr29001	transcription start site region 29001	464 bp downstream
Tssr29002	transcription start site region 29002	1168 bp upstream
Tssr29003	transcription start site region 29003	1205 bp upstream