rs30713519 SNP Detail

Summary

• ID
  rs30713519
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27336322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCCCA AAGCTTCCGG
  GGACCCTCCT GTCTCTGCCT CCACCCATTT CTGCCTTCTT TCAGTGAAAG CCTTGGTGAC
  ACCCAGGGTG TCACCCACTT TGTGTGAGTT CTGGGGGTTA CCCTCAGACC CCATGCTTGT
  GTGATAAACA TTTTATCAAT TGAGCCATCT CTCTAGCTCC TTCCTTGTCT TTATAAATAT
  M
  ATTTTCATTT CATAGGTGCA CACATATCTG TGTACCTTGT GCTTGCCCAA TGGCAGCAGA
  AGCCAGAAGA GAGCACTTGA TCATCTGGAA CTGGGTTTAC AGATGGTTGG AGGTCACCAT
  GTGGGGCTTA GGAATTGAAC CTGGGTCCTA CGGAAGAGCA GCCAGTGTTC TTAACTGTTG
  AGTCATCTCT CCAGCTCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45459247	mCV22684221	ABI	CRAMUS_MOUSE	f	SNP	C	A	C
ss134703430	ENSMUSSNP3531112	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30713519					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27336322 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13020	CpG island 13020	1314 bp proximal
Gm42192	predicted gene, 42192	within coordinates
Rr574385	regulatory region 574385	1397 bp distal
Rr574386	regulatory region 574386	695 bp proximal