rs30713418 SNP Detail

Summary

• ID
  rs30713418
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72593718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AACCGCATCC TGCAGTCTGC
  K
  CTTCCGCCCT CTGATGACGT GAGAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45957633	mCV24088586	ABI	CRAMUS_MOUSE	f	SNP		G	G				G	T
ss51695112	NES14819732	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T		T	G	G		G	T		T
ss133286281	ENSMUSSNP4589351	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					T
ss321822459	CHEV_6_72566729	CHEVERUD	SCREENING_POP	f	SNP											T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30713418					SNP	G	G	G	G	G	T	G	T	G	G	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695112	NES14819732	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72593718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17549	CpG island 17549	within coordinates
Gm20536	predicted gene 20536	545 bp downstream
Gm67593	predicted gene, 67593	38 bp upstream
Rr399708	regulatory region 399708	within coordinates
Rr632243	regulatory region 632243	1239 bp distal
Rr632244	regulatory region 632244	within coordinates
Rr632245	regulatory region 632245	1 bp proximal
Rr632246	regulatory region 632246	93 bp proximal
Rr632247	regulatory region 632247	255 bp proximal
Tgoln1	trans-golgi network protein	mRNA-UTR
Tssr57152	transcription start site region 57152	120 bp upstream
Tssr61478	transcription start site region 61478	within coordinates