rs30712785 SNP Detail

Summary

• ID
  rs30712785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:151944474 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTGTG TGCTCCTTGT TGTACCAGAA
  Y
  CTTCCTTTGG CCCTGGTATG TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46436286	mCV24673028	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148077954	ENSMUSSNP4750396	ENSEMBL	ENSEMBL_Sanger	r	SNP				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs30712785					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:151944474 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9230110K08Rik	RIKEN cDNA 9230110K08 gene			1707 bp upstream
Camta1	calmodulin binding transcription activator 1			Intron
				Noncoding-Transcript-Variant
Cpgi15375	CpG island 15375			523 bp proximal
Gm42357	predicted gene, 42357			within coordinates
Rr398891	regulatory region 398891			1714 bp upstream
Rr605651	regulatory region 605651			412 bp proximal
Rr605652	regulatory region 605652			1134 bp proximal
Rr605653	regulatory region 605653			1719 bp proximal
Rr605654	regulatory region 605654			1768 bp proximal
Tssr44794	transcription start site region 44794			1650 bp downstream
Tssr44795	transcription start site region 44795			1681 bp downstream
Tssr44796	transcription start site region 44796			1745 bp downstream