rs30711680 SNP Detail

Summary

• ID
  rs30711680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152591508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTACTAAA CATTTTGTTG
  TTAGAAAGCA ATACTTAAGC CCACAGGATA AGACTGGGGT CAAGGGTTAG GGAACTTGCA
  TGGTATTGGG GGCCTGGGGG CTCTATGAGA AGAATGAGCT AACAAAATGT GTACATTTAA
  GCCGTCTGTA AAGTTCCATC TGAAGATGTC CTGCAGACAT CCAGATGTAC AATCTAGGAG
  K
  CCAAGAGCTG GATTGGATTG TTACTAGAGA AGATGCAAAC AATTAATGCT AATGGAATGA
  AAAAGGAAAC TCTTCCCAGT GGAAAGAGCA AGAATACCAA GATTGAACTA AGAAATGGCA
  CGTTGAAAAT AAATATGGAG AGGGTCCTAT AGTGGTGTGA GAATAGCAGA AGGCTATTCA
  GATAATGTCT TTCAGATAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45458881	mCV25265515	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
ss136104378	ENSMUSSNP675223	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss321029037	CHEV_3_152548835	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30711680					SNP	G	G	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152591508 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	681 bp proximal
Rr587620	regulatory region 587620	987 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron
Tssr32421	transcription start site region 32421	1578 bp downstream
Tssr32422	transcription start site region 32422	1505 bp downstream