rs30711428 SNP Detail

Summary

• ID
  rs30711428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:134808041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGT TTTAATCCAA CTTAGTGTCC
  Y
  ATATCCAGCC TTTCCCCCCT TTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45958402	mCV24013541	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss133787607	ENSMUSSNP6207050	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321982540	CHEV_6_134781096	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30711428					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134808041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Crebl2	cAMP responsive element binding protein-like 2			Intron
				mRNA-UTR
Gm67917	predicted gene, 67917			983 bp upstream
Rr368197	regulatory region 368197			814 bp downstream
Rr639728	regulatory region 639728			994 bp distal
Rr639729	regulatory region 639729			813 bp distal
Rr639730	regulatory region 639730			within coordinates
Rr639731	regulatory region 639731			596 bp distal
Tssr59250	transcription start site region 59250			899 bp downstream
Tssr59251	transcription start site region 59251			808 bp downstream
Tssr59252	transcription start site region 59252			741 bp downstream
Tssr59253	transcription start site region 59253			304 bp downstream
Tssr59254	transcription start site region 59254			42 bp downstream