rs30711425 SNP Detail

Summary

• ID
  rs30711425
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:71762101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGT CTACAGAGTG AGTTTCAGGA
  M
  AGCCAGAGCT ACAAGGAGAA ATCTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45958399	mCV22748439	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
ss133277255	ENSMUSSNP1580711	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss321818357	CHEV_6_71735111	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30711425					SNP	A	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71762101 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Reep1	receptor accessory protein 1			Intron
				Noncoding-Transcript-Variant
Rr632004	regulatory region 632004			1096 bp distal
Rr632005	regulatory region 632005			1684 bp proximal