rs30711254 SNP Detail

Summary

• ID
  rs30711254
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:32385425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATG GCGGCTAGTC TCCTCCAGTC
  S
  TGCTCATCAC CAAAGGACAT ATGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss45955784	mCV25009110	ABI	CRAMUS_MOUSE	f	SNP		C	C			G
ss51581547	NES14854670	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		G	C	C		G	G
ss133100127	ENSMUSSNP5043313	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss321778038	CHEV_6_32358490	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs30711254					SNP	C	C	C	C	C	G	G	C	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51581547	NES14854670	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32385425 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	Intron
Rr628107	regulatory region 628107	298 bp distal