rs30710201 SNP Detail

Summary

• ID
  rs30710201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151895957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCTCTA AAGGTGTCCT
  TTGAGGAAAA GTTGTAACTT TTATATTTTA AAACTGCATT TCATTATGGT CAGTTGGTCT
  GTTGATGGCA CGTGTGTGTC ATGGTATGCA TGTAGAGGTC AGAGGACAAT CTTCAGAATT
  AAGGTCCCTC TTTCCACCTT GAGGGTCCCA GGGATTGAAC TCAGGTCCAC AAGCACCTTT
  R
  CCCACTGAGC CATCTCTCTG GCTCAATAGA GAAAAATAAT TTAATTGTTT AATACAAACC
  TCTGTTCATA TCCACTTAAC CAAGCCTAAA AGTTTAGGGC AGAGAATAAT TCAAAACCCA
  ATTATAGATT TCTGTAGTTT CATGATTATT TTCAAATATT TATACTATGA AGTAAACTGA
  CTTATTTAGT ATGTAGACTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45458669	mCV22364110	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss136101294	ENSMUSSNP6728648	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss321028362	CHEV_3_151853284	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30710201					SNP	A	A	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151895957 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnajb4	DnaJ heat shock protein family (Hsp40) member B4			Intron
				Noncoding-Transcript-Variant
Rr587480	regulatory region 587480			612 bp distal
Rr587481	regulatory region 587481			790 bp proximal
Rr587482	regulatory region 587482			1506 bp proximal
Rr587483	regulatory region 587483			1519 bp proximal