rs30709162 SNP Detail

Summary

• ID
  rs30709162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89235567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGGAAC CACAACTGAG
  AAGATGCTTG CTGTAAGATT AGCCTGTGGG CAAGTCTGTG AGGCATTTTC TAAATGGTTA
  ATGTACAAGG GCCCAGTTTA CTATGAGTGG TGGCACCCCT GGGCAGGTAG TCCTGGGAGG
  TCGAAGAAAT GTACCTGGAT GTCAGCCTGA GGAGTAAGTC AGCAAGCAGT GTTCCTCCAC
  R
  GCCTCTTCAG CTCCTGCCCC TGGGTTCCTG CCTTGGATAC TGGCTCTGCC TTCAATTCAT
  GGTCGACTGC TAGTTATAAA CTGAAGTAAA TTAAAGTTTG CTTTCTATTA CTGCTCTAAA
  ACACCATGAC CGAAGGTAAC TTGGGAACTC CCCCAAGGTT GGGTTAGGGT TAAGAATCAG
  GGAGACTAAA GTTAAACACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45955276	mCV23955152	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss133370826	ENSMUSSNP1826430	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30709162					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89235567 () rs orientation: forward

Symbol	Name	Function Class
Gm44204	predicted gene, 44204	within coordinates
Gm66553	predicted gene, 66553	776 bp downstream
Rr634088	regulatory region 634088	181 bp distal
Tssr62001	transcription start site region 62001	308 bp upstream