rs30709015 SNP Detail

Summary

• ID
  rs30709015
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAT ATATACGGTT ATGTAGCTTA
  S
  TCATAGATAC TTACCTAGCA TGCAT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45459286	mCV23542882	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss135359181	ENSMUSSNP5566340	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	C
ss320807531	CHEV_3_78398089	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30709015					SNP	G	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501474 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	350 bp proximal
Rr578424	regulatory region 578424	769 bp proximal
Tssr33603	transcription start site region 33603	172 bp downstream
Tssr33604	transcription start site region 33604	242 bp downstream
Tssr33605	transcription start site region 33605	255 bp downstream
Tssr33606	transcription start site region 33606	270 bp downstream
Tssr33607	transcription start site region 33607	346 bp downstream
Tssr33608	transcription start site region 33608	404 bp downstream