rs30708680 SNP Detail

Summary

• ID
  rs30708680
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124382021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTTTTTTTG CAATTACAGA GTGGTATTCA TTTAACAGAA CAACAATTAT CTTCGTATAA
  GCTGCATCAG AGACAACTGA AGATGAAAAA AATAAAACCA AAAGAAAAAA AAAACCAACT
  GTCCCTGTAT ATAACTAATT TGTGCTGTAC ACCAACAAGA ACCTGCTTTA AATTTCCATG
  CCAATTTACA ACCCCTAGAC TGTACCAGGC AAGGTTAGTG GCTATTGAAA ATACCACCAG
  GACAGGGCTA TCTAAAGACA CATTTGGTAG TGTGTTAACT ATACAAAAAA AAAAAAAAAA
  W
  CACACTGTAC AGTTTAAAAA CAAATCTTAC ACAGCCTTAC ATTTCAATTT TTTTCTTTAA
  AAGAAGTGAG TTGTGTGTGT GGTGGGGGGG GGTGTTAAAT GCTTTATAGA CAAGAAAACA
  AACTGCGCTA GAACCAACTT ATTCATTATC ACCATCTTCT TCATTTTCAT CTTCCTCTTC
  TTCCTCGTCC TCATCCTCTT CATCCTCCTC CTCATCTTCC TCTTCCTTCT TTTTCTTGCT
  CTTTTCAGCC TTGACCACCC CCCCCTTTTT CACTGCATCA GGTTTTTCTT TAGCTCTGTA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J	DBA/2J
ss45459046	mCV24044393	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J	DBA/2J
rs30708680					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124382021 () rs orientation: forward

Symbol	Name	Function Class
Gm9379	predicted gene 9379	156 bp downstream
Rr584594	regulatory region 584594	530 bp distal
Rr584595	regulatory region 584595	624 bp distal