rs30707619 SNP Detail

Summary

• ID
  rs30707619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108041317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCCTGTC TGTCTGTTTG CCTGTGTCAT CAATGTATCT
  TCTAATGAAT CTCTTATAAG GACAATCTAT TTCAGTGTCC CCCTTTAGCC TCCAAACTTT
  Y
  GGTCAACAAG AGTGGATGCC CTGTGGGACC CTATTATCAC AGAAAGCAGT GAAGATAGAA
  AATTAGAAGA AGAGGAGGAG GAGGAAGAGG AGAAGGAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45956721	mCV24060758	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss133494211	ENSMUSSNP735721	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30707619					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108041317 () rs orientation: forward

Symbol	Name	Function Class
Gm66771	predicted gene, 66771	within coordinates
Rr399804	regulatory region 399804	537 bp upstream
Rr399805	regulatory region 399805	843 bp upstream
Rr399806	regulatory region 399806	1363 bp upstream
Rr636028	regulatory region 636028	within coordinates
Rr636029	regulatory region 636029	616 bp proximal
Rr636030	regulatory region 636030	942 bp proximal
Rr636031	regulatory region 636031	1447 bp proximal
Setmar	SET domain without mariner transposase fusion	689 bp upstream
Tssr58052	transcription start site region 58052	679 bp upstream