rs30707579 SNP Detail

Summary

• ID
  rs30707579
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108427393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGATAAA GAGCAAAGTC CTGTTCTCCT CCCTTCCCGT
  AAAACCCAGA GGCTTGAATA GAGTTCTAAG ACCAGACATC TGAAGGAACA CTCAAATTCT
  K
  CAGTCTCTGC ATGACTAAAG AGCAGCAAAT AAAAATACAA GAGAATGAGC TAGAAGATAG
  ATCAACAGTT AAGAACACAG GCTGCTCTTC CAGAGGCTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45954956	mCV23380662	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss51814052	NES14768946	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	T	G	G	G	G	G	T	G
ss133502622	ENSMUSSNP5817537	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30707579					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51814052	NES14768946	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108427393 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	500 bp downstream
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636109	regulatory region 636109	1151 bp distal
Rr636110	regulatory region 636110	159 bp proximal