rs30707496 SNP Detail

Summary

• ID
  rs30707496
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19619018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATTTGAA GTTATATCCT
  AATATTCATA TTGCTTCTGG GAAATTTTTA AAGTACAATA TTAATCACAC AAAGATAATG
  AAAGCAAAGA GAGCAGGGTT AGAAGTGAGG TCATGGAACT ATGAGAACTT GAGTAGTTAG
  AATTGTCAGA TAAAGATTTT AAAACAAATA TGATTAAAAG GATGAAAACC AAGACTGAGA
  R
  TTTGCACAGA GTGTCTCGGC ATCACATGTG AACATGTGTG TTTATAAGCT GACAAGCTGT
  GTCTATCACA GACCTGCCTA GACCTCTCTG TTCCCTGTGC TGAATGCTGA CTGGGAACTC
  AGACTTGCCT GTTACCACTC CACCACCCTA GACCAAAACT TTTACAGAAC TATGTGAAGG
  AATTTGCTTC TTAGGGTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45458436	mCV22675083	ABI	CRAMUS_MOUSE	f	SNP		G					A		A
ss60377076	NES15885574	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G		A	A	A	A		A	A	A		A
ss134668998	ENSMUSSNP5052495	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss320679163	CHEV_3_19464854	CHEVERUD	SCREENING_POP	f	SNP												A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30707496					SNP	A	G	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60377076	NES15885574	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19619018 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5b	DnaJ heat shock protein family (Hsp40) member C5 beta	Intron
Rr574002	regulatory region 574002	1841 bp distal
Rr574004	regulatory region 574004	1911 bp proximal