rs30707269 SNP Detail

Summary

• ID
  rs30707269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87079852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA AACACACATC TGCACCCCTC
  Y
  GCAGTTCTGG CTTTCACCTC TGATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45458925	mCV24904448	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135455061	ENSMUSSNP4702884	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320831248	CHEV_3_86976467	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30707269					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87079852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13330	CpG island 13330	1664 bp proximal
Gm64310	predicted gene, 64310	within coordinates
Kirrel1	kirre like nephrin family adhesion molecule 1	Intron
Rr579454	regulatory region 579454	within coordinates
Rr579455	regulatory region 579455	1122 bp proximal
Rr579456	regulatory region 579456	1623 bp proximal
Rr579457	regulatory region 579457	1995 bp proximal
Tssr33927	transcription start site region 33927	1913 bp downstream
Tssr33928	transcription start site region 33928	1973 bp downstream