rs30706755 SNP Detail

Summary

• ID
  rs30706755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118604314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCCATTTA GAACAGAGGG AGAGCCAGCC CTGGGCCCTG
  TAGACTGGGC TGGAGCTGTT TCTTTCCTGG TCTGCCCCTG TAGGGGAGCC TTAGGGAAAG
  Y
  GACATTGGAA CGCTGGGCTG CTCTAAGTCC TGGGGGCAGC AGAGGTTGTC TCACTCCCAG
  CTTTACGAGG GGAAGGGCGC ATGGTTACCT GGAAGGACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45956316	mCV27570179	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss133584483	ENSMUSSNP1830618	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss321925667	CHEV_6_118577371	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30706755					SNP	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118604314 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637498	regulatory region 637498			816 bp distal
Rr637499	regulatory region 637499			889 bp distal