rs30706603 SNP Detail

Summary

• ID
  rs30706603
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:61176638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAAGACAT TCCAGACATT
  CCTGTACAGT AAGGCTCCTG TCCCTTTGTG TTATATAACA AAAGTTACTC ATCCTGGCCT
  TTTCTTAGTC AGACAGACAC TCTGCTCAGC ACTGCCTCCT TAAAAACACT TGACTCACTC
  CACCCTCTGG AGAGATACTT GGCAAATGTC ATTCCTACCT TCCCTGTTTA GCATCTGTCT
  Y
  AACTTGCTGT CAAAGTGTAT CCTGAAAAGC CCCCTGGCTG CACTCCTGCC TTCCAGCTTG
  CTACTTCGGA GTTTCACATT TTTATCTCCT CTAGGTGCTC ATAACATGAT GATGAAAATC
  TAGAGAACCA AGTTCTGTGC TGGCTCTCAT GAGTCATCAT TTCTCTCACT ATGGAAGTGT
  TATTAGACGC GTTCTCACGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45458828	mCV24861546	ABI	CRAMUS_MOUSE	f	SNP		C	T
ss46988150	NES10794660	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30706603					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46988150	NES10794660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:61176638 () rs orientation: forward

Symbol	Name	Function Class
Rr577480	regulatory region 577480	127 bp distal
Rr577481	regulatory region 577481	362 bp distal