rs30706034 SNP Detail

Summary

• ID
  rs30706034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145645335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAACCCA CGTTTCCGCT
  CCGTTTGTAA GGATTCTGCC TGAAAGTAGT CTCAGAGGTC TCTGGGTATG ATGCCTTATT
  AGAGCGGCGG GTGTGAACTC GCTCGCGGGT CCTTGTCCTG CATTTGTGAC CCACTGAAGG
  CTTCGCTTCT GTTGAGACAG CAGTGCTTCA GCTAATCAGG GTTGCAGCGT GAAGCAGCTG
  Y
  GTAGGAGCAG GCCTGGAGTG GTTTGATTTC CTTGCCTTGT TGGTAATCTC GTTTCTGTCG
  TGCCTAGACT GCTGCAGTAA TCTCTTCCTG CAAATCTCTG TCTCCAACTG TAGCTAGTAG
  TGAGCTTCTA CAGTTGATAT CTGATTGTGT AACTGGCTTG CCCCCGAACC TCTACAAACT
  GAAGAGAGCT GGAGAGTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45457841	mCV24197596	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss136040825	ENSMUSSNP558976	ENSEMBL	ENSEMBL_Sanger	f	SNP	C			T
ss321009176	CHEV_3_145602544	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30706034					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145645335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2410004B18Rik	RIKEN cDNA 2410004B18 gene			Intron
				Noncoding-Transcript-Variant
Cpgi13909	CpG island 13909			585 bp distal
Rr398108	regulatory region 398108			1446 bp downstream
Rr586873	regulatory region 586873			1556 bp distal
Rr586874	regulatory region 586874			1610 bp distal
Rr586875	regulatory region 586875			1406 bp distal
Rr586876	regulatory region 586876			within coordinates
Tssr32317	transcription start site region 32317			1517 bp downstream