rs30705535 SNP Detail

Summary

• ID
  rs30705535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121889387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTATCTATC TATCTATCTA TCTATCTATC TATCTATCTA TCTATCTATC TATCTAACCA
  CCCACCCCAT CCACCCATCC ATCCATCCAT CCATCCATCC ATCTATCCAT CTATCCATCT
  ATCCATCTAT CCATCTATCC ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCT ATCTATCTAC CCCACCCACC CATCCATCCA TCCATCCATC
  CATCCATCCA TCCATCTATC CATCTATCCA TCTATCCATC TATCCATCTA TCCATCTATC
  Y
  ATCTATCTAT CTATCTATCT ATCTATTTAT CTACCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTATCTATCT ATCTATCTAC CTATCTACCT ATCTATCTAT CTACCTATCT
  ATCTTCTTTA TTGGTTAGCC ACAATTCAAT TCACTCTTTG TGAGTGAATG TTTCAGAAGC
  CTGTTCACAC TGCCTGATTT ATTCTTGCCT CTAATTCACC ATCCCAAACA ACCCAAATAG
  CCCAGAGTGA TTTTTACACC GTGGCTTTTT CCATGTAGTT GGAAATAAAT TGTGAAGGTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
ss45458606	mCV23985217	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J
rs30705535					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121889387 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			584 bp distal
Rr584230	regulatory region 584230			1110 bp proximal