rs30705131 SNP Detail

Summary

• ID
  rs30705131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146048217 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGATTATAG GCGGACTTGG
  CTGAAGGAAC TCAGAATGTC TTAATAATCA CTTAATAGAA TCTTATCATG AGAAGCAAAT
  TGCATTAAAT GGGCGAATGA AGTTGACTGT GAGAAACGAA GCCAGGAAAT AAAATGCTAT
  GGGGGGTTTT ATATGGGGAA AATCCAATTA ACACCCTTTT AAAAGAGTTG GCCTCATGGC
  Y
  TTTCCATATC CCGCACTGTG TCTAGCAGAG GGCTACACCC CAAATAAAGA CCTCTCTCAT
  TATGAAGGGA CTTGTAGGTA AAAATGAAGA ATGTGAAGGA AATGCTGGAT AGGGGAAGAG
  GGAAGAAGAT CTACAAGTCA TTGGACCTTA AAATTCCACT TGGAAACAAA GAACAATGTA
  ACTTCATCAT GAAGCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss45456861	mCV24237055	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					T
ss47026560	NES10845710	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C	T	T	T		T	C
ss136043370	ENSMUSSNP6432615	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss321010000	CHEV_3_146005426	CHEVERUD	SCREENING_POP	f	SNP											C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30705131					SNP	T	T	C	T	C	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026560	NES10845710	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146048217 () rs orientation: forward

Symbol	Name	Function Class
Rr587006	regulatory region 587006	1992 bp distal
Rr587007	regulatory region 587007	within coordinates
Rr587008	regulatory region 587008	1242 bp proximal
Rr587009	regulatory region 587009	1351 bp proximal