rs30704075 SNP Detail

Summary

• ID
  rs30704075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26693575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCGGAGCA CTTCAGCCTG
  CCTGGCTGCG GTTCTGTCAT TGCGAGAGAC CATGTCATTA CCCTGGCATG CCTGGCACAC
  AATGGGCACG CTGAAAGGCT GCAGCTGATG TGGGAAAGAG GGATACAGCT GGAAGCAAGG
  CTGTTGTTGC CTTGTCTCCC AGGCACACAG ATTTAAAGTA TCCAAAGCGC TTCTGAAAGT
  R
  CGCAGGTCTG CCTAACTTCA CCCGTTGCCA TGGTGAGCAA CACAAACGTA ATCAAGATTG
  AACTGAGACG TTGTTTTGTT CCACAAGTGA ACTTTCCACT GAAGTATGTA TCCTGTATTG
  TTCAGTCTGT TATTCATCTG TGTTATTATA ACCAAATGGC AAATTCCTCC CATCTGGTCA
  TTTTTCAAAG AGATTTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45457520	mCV24231352	ABI	CRAMUS_MOUSE	f	SNP	G	A					G		G
ss51442524	NES14434433	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	G	A		G	G	G	G	G	G	G	A	G
ss134696961	ENSMUSSNP3715301	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30704075					SNP	G	A	A	G	G	A	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442524	NES14434433	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26693575 () rs orientation: forward

Symbol	Name	Function Class
Gm65182	predicted gene, 65182	1872 bp upstream
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	within coordinates
Rr574325	regulatory region 574325	21 bp proximal
Rr574326	regulatory region 574326	730 bp proximal
Spata16	spermatogenesis associated 16	Intron
Tssr28597	transcription start site region 28597	1789 bp downstream
Tssr28598	transcription start site region 28598	1766 bp downstream