rs30704026 SNP Detail

Summary

• ID
  rs30704026
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:114659438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCAATTGA CGTTTGCTTT GCCATTGTGA AAAGGGGTTC
  TCTTTCTTCA GTTCATCACT TAGGGGCCAA ACTGGGCACT GTGGAGGCTT TAGTTATTAG
  K
  CTCTCATCTA GAACTGCATC CCATGCATAT TTATATTTTA AAAGCCAGCC AGTGGTTCCC
  TTTCTGTGAA AACTCTGGGA CAGGCACGTC CACAGAGAA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45956199	mCV22284860	ABI	CRAMUS_MOUSE	f	SNP	T	T	G
ss133571423	ENSMUSSNP5254465	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30704026					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:114659438 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atg7	autophagy related 7			Intron
				Noncoding-Transcript-Variant
Rr636807	regulatory region 636807			within coordinates
Rr636808	regulatory region 636808			1378 bp proximal