rs30703680 SNP Detail

Summary

• ID
  rs30703680
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101006137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACATATG TGTGTGCATT GTGTGGTATG TGTTTGTGTG
  CATGTGTGTG GTATGTATGC ATGTGTGGTG TGTGCATGTG TGGTGTATGT ACATGTATGC
  R
  TTGTATGTAC ATCTGTATAT GTGTGTATGA TCGCCATATA AACACTATAT AATACGCACA
  TATCCCACAG ATGCTTTCTA AGCATGTACG TAAATCCAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45456738	mCV23027362	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss135544306	ENSMUSSNP1071142	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320850906	CHEV_3_100902744	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30703680					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101006137 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581956	regulatory region 581956	1305 bp distal
Rr581957	regulatory region 581957	274 bp distal
Rr581958	regulatory region 581958	519 bp distal
Rr581959	regulatory region 581959	880 bp proximal
Tssr34769	transcription start site region 34769	1751 bp upstream