rs30703626 SNP Detail

Summary

• ID
  rs30703626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72284817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGT CCCCAGGGGC CAAGGACATC
  S
  ATCCATCAAT AAAAAATGAG CTCAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss45955799	mCV25198419	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		C
ss47978470	NES11923128	PERLEGEN	MM_PANEL2	f	SNP	G		G	C	G	G	C		G	C	G	C		G		G
ss133283805	ENSMUSSNP2507453	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							C
ss321821416	CHEV_6_72257827	CHEVERUD	SCREENING_POP	f	SNP													C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30703626					SNP	G	G	G	C	G	G	C	G	G	C	G	C	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978470	NES11923128	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72284817 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	635 bp proximal
Sftpb	surfactant associated protein B	Intron
Tssr57085	transcription start site region 57085	1936 bp downstream
Tssr57086	transcription start site region 57086	1891 bp downstream
Tssr57087	transcription start site region 57087	1856 bp downstream
Tssr57088	transcription start site region 57088	1804 bp downstream
Tssr57089	transcription start site region 57089	1043 bp downstream
Tssr57090	transcription start site region 57090	968 bp downstream
Tssr57091	transcription start site region 57091	906 bp downstream
Tssr57092	transcription start site region 57092	621 bp downstream