rs30703187 SNP Detail

Summary

• ID
  rs30703187
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86716620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT CTCTGTGTAG AGTGTGAGCA
  S
  CATCTGAACC CAGCGGAAGT GACTC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss45455977	mCV24907527	ABI	CRAMUS_MOUSE	f	SNP	C						G
ss46735901	NES10753049	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	G	G	C	G	G	G	C	G	C
ss135449110	ENSMUSSNP4155105	ENSEMBL	ENSEMBL_Sanger	f	SNP							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30703187					SNP	C	C	G	G	G	C	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46735901	NES10753049	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86716620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			897 bp distal
Rr579388	regulatory region 579388			1044 bp distal
Rr579389	regulatory region 579389			within coordinates