rs30701730 SNP Detail

Summary

• ID
  rs30701730
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19619458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTCAA GAGGAGAGAA
  CTTTAAAATA AACAATAGTG TTATCCAGAA GATACCATTA AGTAATAATG CAATAAAGGG
  AGATGTATTC AGTGTAAATA ATCAATGAAA GATTCATGAG GAGCACATAC AGAATATTTT
  CTTAGACCCT ACAAATTAAT TTTAAAAGCC AAACTAAAAG TTATAAAAGA CAGAAATATA
  Y
  TATTTCTAAA TGTTTCTTTC TACATATAAC TATATAAAAT ATATAACTAG CCTTATTATA
  GATCATAATA TTACATATAT AGAGATATAT ATGTATACAT GTAAAACATA AACATATAGA
  GACTATGTAC AGAATCAGAC AGACATTAAG GTGCTGGTTC ATCCCAAATG TTATGGTACT
  CATTTTCTGT ATCTTCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45456515	mCV22675084	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss134669001	ENSMUSSNP1462463	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320679164	CHEV_3_19465294	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs30701730					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19619458 () rs orientation: forward

Symbol	Name	Function Class
Dnajc5b	DnaJ heat shock protein family (Hsp40) member C5 beta	Intron
Rr574004	regulatory region 574004	1471 bp proximal