rs30701592 SNP Detail

Summary

• ID
  rs30701592
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15259408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAACGAGT AACAATTAGA GGGTGCAGGG GTTGGTTATT
  AATACTTGAT CTTTGGTGTT GTTTTAAAAA TCCAATTATG AATGATAGAG TTTCTGATTT
  W
  AAAAAAAAGC TTTCTGAGAC TTTATTGCTC AAATTGTCTC TGATTTGGAT AGGTAGCCAT
  CAGTTTTTAC TCTAAAAAAA GGAAAGACAA AACGAGCAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45457104	mCV25444618	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					A		T
ss60373000	NES15871315	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	T	A	A	A	A	A
ss134620107	ENSMUSSNP5276456	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30701592					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60373000	NES15871315	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15259408 () rs orientation: forward

Symbol	Name	Function Class
Rr573761	regulatory region 573761	71 bp distal
Rr573762	regulatory region 573762	58 bp proximal
Rr573763	regulatory region 573763	211 bp proximal
Rr573764	regulatory region 573764	1772 bp proximal